There is a great indie game called Dredge where you are a fisherman who has to manage an upgrade their boat by catching different varieties of fish, while following a story. You start going up against these lovecraftian creatures on your journeys, gets very weird and cool. Also the art style and graphics are gorgeous.
Sounds very up your street in terms of forming a relationship with the vehicle, there are survival aspects on how long you can be out at sea for and things. Plus lots of fun stuff on the way to discover