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Varying air pressure is certainly a concern, but repeating the experiment, as you said, would help to reduce the error, as would being as close to sea level as possible. Interestingly, if you have your meter measure you could use that to measure atmospheric pressure by seeing how far you could raise water in a column by suction. At standard atmospheric pressure you should be able to lift fresh water 10.3m.
Gravity is altogether too unreliable and should be abolished. Failing that, You could measure the local gravity by measuring how far a rock falls in a fixed time, say one second, and calculating back from that. If the rock is heavy enough we can ignore air resistance as the effect will be smaller than our measurement error.
Oh yeah! I should have remembered that actually, since I was just rewatching an episode of Connections 2 that mentions this height limit in the context of vacuum pump history (I think it's detailed more in season 1 but I forget which episode). So 10.3 m is another key measurement that you want at least one human to have memorized :]
This reads like a Douglas Adams quote and I love it.