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Fact Check: No, A New Study Does Not Show "Being Trans Is Just A Phase"
(www.erininthemorning.com)
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Scientific skepticism or rational skepticism, sometimes referred to as skeptical inquiry, is a position in which one questions the veracity of claims lacking empirical evidence.
Do not confuse this with General Skepticism, Philosophical Skepticism, or Denialism.
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"A wise man proportions his belief to the evidence." -David Hume
A "hallmark sign" of having gender dysphoria is persistent identification with or insistence on being the opposite sex for at least a period of six months. And "not everyone who is questioning their gender ends up being trans" is not a statement anyone would argue with.
And no, confusion does imply being wrong. I rarely if ever saw it used as a short-hand for "not having an answer". It usually means either "fail to understand" (e.g. "I'm confused, is the birthday on the 5th or on the 15th?") or "made a mistake" (e.g. "Oh, sorry, I confused you for a friend of mine"). The term you're looking for is "questioning their gender" or "exploring their gender identity".