If you used regular filesystem moves, p4 may have registered them as separate deletes and adds. Depending on workspace configuration, Perforce may not propagate deletes from the depot, so old copies might be left behind. Always move files in a workspace using P4V, your Perforce plugin, or the p4 mv
command to ensure file continuity. If done properly, this will appear as add/move and delete/move.
But if things aren't showing up in new places, it's likely you referred some things you didn't mean to or didn't commit everything. Check to see if you still have anything checked out. Also worth noting that empty directories don't exist as far as Perforce is concerned.
If you're random Joe Schmoe who happens to need a database, I don't expect you to contribute. But when you're of the largest tech firms in the world...