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After some more research it seems that Joplin only E2E encrypts notes at transport and not at rest[1]? e.g. it only stores plain text files on the harddrive just like Obsidian does? This sadly makes it not viable for my use case :/
[1] https://discourse.joplinapp.org/t/requesting-encryption-of-local-joplin-data-at-rest-encryption/15145
E2e in transport is https with extra steps 😅
No it is fully encrypted, even on the server. This topic was years old. You can read a good explanation here
Oh thanks for the heads-up! Will look more into it then.